Save a fitted pigauto model — save

Serialises a pigauto_fit object to disk, including the torch model state. The saved file can be loaded on any machine with the same pigauto version.

Usage

save_pigauto(fit, path, compress = TRUE)

Arguments

fit: pigauto_fit object.
path: character. File path to save to (recommended extension: .pigauto).
compress: logical. Use gzip compression (default TRUE).

Value

Invisible path.

Details

Standard saveRDS() does not work for pigauto fits because torch tensor states cannot be serialised by R's native mechanism. This function converts the model state to a portable raw format before saving.

Examples

# \donttest{
data(avonet300, tree300)
tree <- ape::keep.tip(tree300, tree300$tip.label[seq_len(30L)])
traits <- avonet300[match(tree$tip.label, avonet300$Species_Key),
                     c("Mass", "Wing.Length"), drop = FALSE]
rownames(traits) <- tree$tip.label
traits$Mass[seq_len(3L)] <- NA_real_
fit <- impute(traits, tree, epochs = 5L, verbose = FALSE)$fit
#> Warning: phylo_signal_gate requires the 'phytools' package; returning NA for all traits.
#> Warning: Small validation set for 2 trait(s): Mass (n=2), Wing.Length (n=5). Calibrated gate and conformal scores will be noisy for these trait(s). 95% split-conformal coverage is NOT achievable for 2 trait(s) with fewer than 19 validation cells (Mass (n=2), Wing.Length (n=5)): the achievable ceiling is n_val / (n_val + 1), which only reaches 0.95 at n_val >= 19. See `?fit_pigauto` under 'Calibration at small n' for smoothing options.
path <- tempfile(fileext = ".pigauto")
save_pigauto(fit, path)
#> Model saved to /tmp/RtmpIi0vQk/file1ed11b042f78.pigauto (10,537 bytes)
fit2 <- load_pigauto(path)
# }